FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459365
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14330.3119523690311626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13650.29714932569960706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12410.2701555408008882No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8580.18677957615403873No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6840.14890120057035255No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6040.1314858554744049No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5920.12887355371001274No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5840.12713201920041797No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5420.11798896302504544No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5260.1145058940058559No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4910.10688668052637881No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4700.10231515243869255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)