FastQCFastQC Report
Wed 31 May 2023
EGAF00007926917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460998
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12700.275489264595508No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10620.2303697629924642No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7900.17136733781925303No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7280.1579182556106534No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6500.14099844250951196No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6330.13731079093618626No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5750.12472939145072212No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5180.11236491264604186No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5060.10976186447663547No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4920.10672497494566137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4850.10520653018017431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)