FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450052
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12200.2710797863358012No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9870.2193079910765867No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7180.15953712015500432No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6830.15176024103881328No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6010.13354012425230863No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5470.12154151075875676No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5420.12043052802787234No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5000.11109827308844311No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4960.11020948690373555No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4870.10820971798814359No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4510.1002106423257757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)