FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450052
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20720.4603912436785083No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14630.32507354705678454No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12720.2826340067369993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12170.27041319669727054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7880.17509087838738635No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6130.13620648280643124No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5850.12998497951347845No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5200.11554220401198084No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5150.11443122128109641No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5030.11176486272697377No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4710.10465457324931342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)