FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489419
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG26710.5457491433720392No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22200.4535990633792313No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20310.41498184582126973No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT19860.4057872702122312No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC11280.230477361933231No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8720.17817044291292328No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8470.17306234535234635No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6970.14241375998888478No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTT6080.12422893267323092No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5870.11993813072234628No Hit
CACGTTGATACCAGCGCCGCTGTTGCGGGATACGCTCAGGG5770.11789489169811553No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGG5580.11401273755207707No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT5340.1091089638939232No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC5330.10890463999150013No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4950.1011403316994232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)