FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489419
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG48820.9975092916294627No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA26290.5371675394702699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC19760.4037440311880004No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT11980.24478003510284646No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9860.20146336778915408No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9140.1867520468146925No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8590.17551423218142326No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7520.15365157462215404No Hit
GCAGTTGCGCCGGAACCAGTAGCACCGGCTCCG6210.12688514340473092No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGACT6070.12402460877080784No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACACT5740.11728191999084629No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA5710.11666894828357706No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5670.11585165267388475No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5480.11196949852784628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5420.11074355511330781No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5400.11033490730846167No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5150.10522680974788473No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5070.10359221852850012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)