FastQCFastQC Report
Wed 31 May 2023
EGAF00007926923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478222
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG24660.5156600909201166No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22380.4679834888399112No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20640.4315987135681754No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT20210.4226070737021718No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10270.21475381726478496No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8150.17042294164634836No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8000.1672863230884401No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7190.15034858287573555No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTT6150.12860136087423832No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGG6050.12651028183563282No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5590.11689131825804752No Hit
CACGTTGATACCAGCGCCGCTGTTGCGGGATACGCTCAGGG5540.11584577873874477No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT5230.1093634337190677No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5210.1089452179113466No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC4980.10413573612255396No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4980.10413573612255396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)