FastQCFastQC Report
Wed 31 May 2023
EGAF00007926924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478222
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG50831.0628954753231763No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA24430.510850609131324No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22620.4730020785325644No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC20150.4213524262790085No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT10800.22583653616939414No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9790.20471663787947855No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8640.1806692289355153No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8010.16749543099230066No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7420.1551580646645282No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6220.13006511620126218No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACACT6120.12797403716265668No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGACT6100.12755582135493557No Hit
GCAGTTGCGCCGGAACCAGTAGCACCGGCTCCG5970.12483741860474842No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5480.11459113131558148No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5420.11333648389241817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5180.10831789419976495No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA5110.1068541388727411No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC4850.1014173333723668No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4830.1009991175646457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)