FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481708
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG25730.5341410148886877No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22170.4602373221951888No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT20240.4201715562124773No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20030.41581206872213045No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10430.21652121202056016No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8290.17209595854750181No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8250.17126557997791192No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6750.14012638361829158No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTT5930.12310362294169913No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGG5890.12227324437210925No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT5630.11687578366977505No Hit
CACGTTGATACCAGCGCCGCTGTTGCGGGATACGCTCAGGG5580.1158378104577877No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5530.11479983724580035No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC5200.1079492140466839No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5030.10442010512592692No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC4980.10338213191393955No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4820.10006061763558007No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4820.10006061763558007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)