FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459917
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA29340.6379411937371308No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG25860.562275367077103No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15320.3331035817332258No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13320.28961747445734776No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13120.2852688637297599No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12270.26678726813751175No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10920.2374341457262941No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9070.19720949649610692No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9060.1969920659597275No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8580.1865554002135168No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG8420.18307651163144656No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7470.16242061067540448No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6940.1508967922472968No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6620.1439390150831563No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6560.14263443186487995No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6470.14067755703746546No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6160.13393721040970435No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6140.13350234933694557No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6010.13067575236401352No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT5930.1289363080729784No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5850.12719686378194328No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC5720.12437026680901118No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5690.12371797519987301No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5650.12284825305435546No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5180.11262901784452413No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5090.11067214301710962No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT4790.1041492269257279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)