FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440666
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA27190.6170206006363096No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG24750.5616498663386783No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14370.3260973163348205No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12730.28888092115116665No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12430.2820730439834251No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11550.26210327095804986No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10790.24485664879977126No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8680.19697457938665563No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8540.19379757004170958No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7510.17042385843246358No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7080.1606659011587007No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG7070.160438971919776No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6920.1570350333359052No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6600.1497732976903142No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6440.14614242986751871No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6170.1400153404165513No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6040.13706526031052996No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5920.13434210944343333No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT5820.13207281705418616No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC5580.12662651531999292No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5330.12095328434687497No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5280.11981863815225136No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5210.11823013347977834No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5150.11686855804623002No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4970.11278383174558508No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4930.11187611478988622No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT4450.10098351132149973No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4410.10007579436580086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)