FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440666
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG60641.376098904839493No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28750.6524215619085657No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19860.4506814685044909No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16130.3660368623855709No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12460.28275383170019924No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11310.2566569692238566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11150.2530261014010611No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11030.2503029505339645No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9320.21149805067783764No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7920.17972795722837703No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7600.17246622158278607No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA7170.16270826430902316No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7030.1595312549640771No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6700.1520425900795614No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6290.14273849128364793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6260.14205770356687378No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC5540.12571879836429403No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5500.12481108140859516No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5380.12208793054149854No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5320.12072635510795024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5030.1141454071791334No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC4970.11278383174558508No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC4580.10393359142752107No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4410.10007579436580086No Hit

[OK]Adapter Content

Adapter graph