FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466126
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11710.2512196273110704No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9740.20895637660203464No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9180.19694245761875542No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7810.1675512629632331No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7250.15553734397995392No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5800.12442987518396313No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5320.1141322303411524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)