FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463124
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12330.2662353926810098No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9330.20145792487541136No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6860.14812447638213525No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6790.14661300213333794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6380.1377600815332395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6040.13041863518193833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5270.11379241844516803No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4990.10774652144997884No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4930.10645097209386688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)