FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464761
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA11020.23711111732697018No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10550.22699839272228092No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9970.21451886023138772No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9480.2039758069201159No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9360.20139383468062078No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8780.18891430218972763No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8390.18052289241136843No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7850.1689040173336403No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6910.14867856812426172No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6810.1465269245913491No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6340.1364141999866598No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5480.11791006560361132No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5330.1146826003042424No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4880.10500020440613562No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4760.10241823216664049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)