FastQCFastQC Report
Sun 21 May 2023
EGAF00007926948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464761
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22750.48949890373762No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21860.47034927629469775No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11090.23861726780000903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11060.23797177474013526No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10910.23474430944076635No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10870.23388365202760128No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9260.19924219114770816No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7480.16094293626186362No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7160.15405767695654327No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6790.1460965958847666No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6160.1325412416274171No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5300.11403710724436861No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5050.10865799841208708No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4870.10478504005284436No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4720.10155757475347545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)