FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453277
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10630.2345144359850599No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10410.2296608916843343No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9790.21598272138228944No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9390.20715809538097013No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9250.2040694762805084No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8380.18487591472763895No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8070.1780368295766165No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7290.1608288088740439No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6530.1440620194715373No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6300.1389878595207787No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6080.1341343152200531No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5480.12089737621807416No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5350.11802937276764539No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5200.11472013801715066No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4750.10479243376566648No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4750.10479243376566648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)