FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453277
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22140.4884430491730222No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21470.4736618006208124No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21380.47167625977051564No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11430.2521636879876985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10470.23098458558453222No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10390.22921966038426836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10010.22083626568301504No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9120.20120147283007964No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6800.1500186420224278No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6730.1484743324721969No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6110.13479616217015203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5290.1167056788674475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5190.11449952236711769No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4700.10368935551550156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)