FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434227
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7110.16373924237783463No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6330.14577628751781901No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6150.14163099024243078No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6030.13886745872550532No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5240.1206742095724126No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC4950.11399567507317601No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)