FastQCFastQC Report
Sun 21 May 2023
EGAF00007926961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438792
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7080.16135207569873655No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6790.15474302175062443No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5780.13172528213823406No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT5680.1294462980181954No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5550.12648361866214516No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC4940.1125818155299094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)