FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474083
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11610.24489382660842088No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9740.20544925677571227No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7450.157145478745283No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6550.13816146117873873No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6100.12866945239546662No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5640.11896651008367733No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5480.1155915736274028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)