FastQCFastQC Report
Wed 31 May 2023
EGAF00007926968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489427
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27540.5626988294474967No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19670.4018985466678381No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9880.201868715865696No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9570.19553477842456585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9520.19451317561148038No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8750.17878049228996357No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7430.15181017802450622No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG7230.14772376677216417No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC7170.14649784339646157No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6360.12994787782447637No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6070.12402258150858043No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5830.11911888800577No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4940.100934357932848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)