FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503325
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT72791.4461828838225799No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC43040.855113495256544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT41660.8276958227785227No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15490.3077534396264839No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9610.190930313415785No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9570.19013559827149457No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8770.1742412953856852No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG8180.16251924700740078No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC8010.1591417076441663No Hit
ATGTTTAACGTGCAGATCAAGAAAGGTATCTAT7310.1452341926190831No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCATC6500.1291412109472011No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5870.11662444742462624No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5780.11483633834997269No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5550.11026672627030248No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5530.10986936869815725No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5300.10529975661848706No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5250.10430636268812397No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5140.1021208960413252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)