FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488185
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC33730.6909265954504952No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC32100.6575376138144351No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT30400.6227147495314276No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA21890.448395587738255No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG15310.31361061892520253No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15020.3076702479592777No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8230.1685836312053832No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG8150.1669449081803005No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC7840.160594856458105No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7500.15363028360150352No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7430.15219640095455617No Hit
AACACCGCGTTCGGAGCCATCGATCATAACGAAAATTTTAC6960.14256890318219528No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCA6220.12741071520018027No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5730.11737353667154869No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5440.1114331657056239No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5000.10242018906766902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)