FastQCFastQC Report
Wed 31 May 2023
EGAF00007926972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488185
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT70481.4437149850978623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT40360.8267357661542243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC39490.80891465325645No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23730.48608621731515717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14930.30582668455605966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9130.18701926523756363No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9020.1847660210780749No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8910.1825127769185862No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG8060.16510134477708246No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7890.1616190583487817No Hit
ATGTTTAACGTGCAGATCAAGAAAGGTATCTAT7300.14953347603879677No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCATC6030.12351874801560883No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5600.11471061175578931No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5590.11450577137765397No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5460.11184284646189456No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5230.10713151776478179No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5090.10426375247088707No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5070.10385407171461637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)