FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507207
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25220.49723288519283054No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19800.3903731612536893No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5820.11474605042911473No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5670.11178867799537467No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5600.11040857085962931No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5130.10114213723391041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)