FastQCFastQC Report
Wed 31 May 2023
EGAF00007926987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518455
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16710.32230376792585663No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15900.30668042549498026No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14920.2877781099613274No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA13520.26077480205610903No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12830.2474660288742514No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT12740.24573010193748734No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12330.2378219903366734No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10960.21139732474370967No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT9340.18015063988195695No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9100.17552150138391953No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8960.1728211705933977No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7920.15276157043523547No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7400.14273177035615434No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7340.141574485731645No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7260.14003143956563252No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6770.13058028179880607No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5670.10936339701613448No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5660.10917051624538292No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5510.10627730468410952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)