FastQCFastQC Report
Wed 31 May 2023
EGAF00007926988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518455
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT35390.6826050476897706No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21490.4145007763451023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC17390.3354196603369627No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT17130.33040476029742216No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA13180.254216855850556No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC13040.25151652506003414No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12710.24515145962523266No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11590.22354881330105794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9750.18805875148277093No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC9500.18323673221398193No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8870.17108524365663366No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8280.1597052781822916No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7910.1525686896644839No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7120.13733110877511065No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6990.1348236587553404No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6190.11939319709521559No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6160.11881455478296092No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5670.10936339701613448No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5420.10454137774734548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)