FastQCFastQC Report
Sun 21 May 2023
EGAF00007926989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531767
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11160.20986635124029887No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10970.20629335780520414No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9870.18560760633886647No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8660.16285327972589497No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8480.1594683385768579No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8050.15138209027638044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7330.13784232568023214No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7280.13690206424994406No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTAT6530.1227981427956229No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC6440.12110567222110437No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6310.11866099250235536No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC6170.11602826049754873No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG6110.11489994678120304No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5930.11151500563216596No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5700.10718980305284082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)