FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531767
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23930.45000912053587383No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18310.3443237357714939No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT12610.2371339327186531No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12260.23055210270663656No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11590.2179525995407763No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC11050.2077977760936651No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10670.20065178922347568No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7560.14216752825955728No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAAAC6970.13107244338215795No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6900.12975607737975467No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6680.12561892708648714No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC6430.12091761993504672No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6010.11301942392062689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)