FastQCFastQC Report
Wed 31 May 2023
EGAF00007926991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518473
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11640.22450542265460305No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10190.19653868186000042No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9780.18863084480773348No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9650.1861234818399415No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8180.15777099289644783No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7950.15333488918420055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7320.1411838224941318No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTAT7180.13848358545189432No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7060.1361690965585479No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC6750.1301900002507363No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5820.11225271132730152No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5800.11186696317841045No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5800.11186696317841045No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5650.10897385206172741No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5560.1072379853917176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)