FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518473
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24210.4669481342326408No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23330.4499752156814338No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19100.36838948219097234No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT11910.2297130226646325No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11680.2252769189523852No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC11380.2194906967190191No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10730.20695388188005934No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10570.20386789668893077No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAAAC7590.14639142250416126No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC7080.13655484470743895No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7010.13520472618632023No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6240.120353422454014No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6140.11842468170955864No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACTCT5280.10183751130724261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)