FastQCFastQC Report
Sun 21 May 2023
EGAF00007926995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518730
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG14500.27952884930503347No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6240.12029379445954543No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6170.1189443448422108No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC5930.11431766043992057No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5460.10525707015210226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)