FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32110.5412357232433015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13050.2199665583408622No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11630.19603149988538143No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8610.1451273614800631No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8430.1420933399857064No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6670.11242735204088512No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6500.1095618872962149No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6370.10737064955029059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)