FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543279
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG94051.731154710563081No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17430.3208296289751675No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13510.24867517426589283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7940.14614958428358174No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7780.1432045044995297No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7050.12976757798479235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6760.12442962087619805No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6640.12222081103815904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.11559438152404196No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5910.10878388452342166No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5890.10841574955041516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)