FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499923
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24970.49947691944559464No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23170.46347137459168714No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22780.45567017320667386No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19530.39066016166489637No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19000.38005852901346804No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18010.3602554793438189No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17480.34965384669239064No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16650.33305128989864435No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15900.3180489795428496No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13930.27864291100829525No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13810.2762425413513681No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12440.2488383211014496No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12140.2428373969591317No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11770.23543625718360628No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11760.23523622637886235No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10720.21443302268549358No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10510.21023237578587103No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10410.20823206773843173No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10180.20363135922932132No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10120.20243117440085773No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9910.1982305275012352No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9260.1852285251928797No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8900.1780274162220982No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8580.1716264304702924No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8350.167025721961182No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8040.16082476701412018No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7670.15342362723859473No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7530.1506231959721797No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7250.14502233343934967No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7230.1446222718298618No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7070.1414217789539589No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6960.13922144010177567No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6890.13782122446856815No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6750.13502079320215313No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6680.13362057756894563No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6570.1314202387167624No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6300.12601940698867625No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6290.12581937618393232No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6280.1256193453791884No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6250.12501925296495658No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6240.12481922216021268No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5750.11501771272776008No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5690.1138175278992965No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5590.11181721985185718No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5580.11161718904711326No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5420.10841669617121037No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5310.10621635731902714No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5010.10021543317670922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)