FastQCFastQC Report
Wed 31 May 2023
EGAF00007927027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516245
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26740.5179711183643425No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24200.46876967331402725No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23500.4552102199537041No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20070.38876889848812096No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19370.37520944512779786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18970.3674611860647561No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18140.3513835485089444No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17490.3387926275315015No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16230.31438561148291994No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14450.27990585865238404No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13900.26925200244070163No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG13670.2647967534794526No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12710.24620093172815233No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12020.23283518484440527No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11950.23147923950837296No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11570.2241183933984833No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11290.21869461205435403No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11250.21791978614804983No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10770.20862187527239973No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10660.20649110403006327No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9890.19157570533370782No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9800.18983234704452343No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9270.1795659037859931No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8960.1735610030121357No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8840.17123652529322317No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8360.16193861441757307No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8110.15709595250317196No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7800.15109105172931456No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7440.144117618572577No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7380.1429553797131207No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7260.14063090199420816No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7160.13869383722844775No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7020.13598194655638313No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6940.13443229474377477No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6820.13210781702486224No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6770.13113928464198202No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6640.12862110044649344No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6560.1270714486338851No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6440.12474697091497254No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6250.12106654786002768No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6130.11874207014111517No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT6040.11699871185193075No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6010.11641759242220263No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5720.11080010460149735No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5500.10653856211682439No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5430.10518261678079206No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5360.10382667144475975No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5310.10285813906187953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)