FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508754
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13750.2702681453118796No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11310.22230783443471697No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9040.17768902062686487No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8480.16668173616325377No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6270.1232422742622171No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5970.11734551472813973No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5440.10692790621793637No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5250.10319329184635403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)