FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547457
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14600.26668761199509733No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11530.21061014837695013No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10180.18595067740480076No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9490.17334694779681326No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6930.1265852843237003No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6310.11526019395130577No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5960.10886699777334109No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5610.10247380159537645No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5570.10174315060360904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)