FastQCFastQC Report
Sun 21 May 2023
EGAF00007927032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547457
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28770.5255207258286952No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19120.3492511740648124No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14110.2577371373459468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12510.2285110976752512No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9900.180836120462429No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6700.12238404112103782No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6080.11105895074864328No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5890.10758835853774816No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5860.10704037029392263No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5590.10210847609949275No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5490.10028184862007428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)