FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543383
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26310.4841888686248926No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22790.41940951409963134No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG15480.28488193410541No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15070.2773366115612744No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14770.27181564384605333No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14530.26739886967387644No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12860.2366654827258122No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11440.21053290220709886No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10800.19875483774796043No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10410.19157757971817302No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10200.18771290231751822No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9950.18311209588816726No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9940.18292806363099323No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9860.18145580557360094No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9260.17041387014315867No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT8740.16084419277010872No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8060.1483299992822742No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7580.1394964509379204No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7490.13784016062335405No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6830.1256940316498676No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6640.12219741876356087No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6490.11943693490595031No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6260.11520419299094745No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6160.11336387041920708No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6070.11170758010464076No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5800.10673870916094172No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5780.10637064464659365No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5560.10232193498876482No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5530.10176983821724273No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5480.10084967693137253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)