FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543383
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG93051.7124201530044187No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29680.5462077392925432No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26940.49578290082685694No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22610.41609693347049875No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16770.3086220952808608No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16480.3032851598228138No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15680.2885625792488908No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15430.2839617728195398No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG14660.2697912890171389No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11160.2053799990062258No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11100.2042758054631816No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11050.2033556441773114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10700.19691451517622008No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10480.19286580551839125No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10210.18789693457469225No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9780.17998354751620865No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8950.16470887017076352No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8910.1639727411420674No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8550.15734757988380205No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8240.1516425799114069No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7930.1459375799390117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7890.14520145091031555No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7430.13673596708030986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7250.13342338645117716No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6960.12808645099313007No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6470.11906887039160223No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6420.11814870910573205No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6420.11814870910573205No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6290.11575628976246957No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6120.11262774139051093No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5770.10618661238941962No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5760.10600258013224559No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5750.10581854787507154No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5630.1036101607889831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)