FastQCFastQC Report
Wed 31 May 2023
EGAF00007927045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586643
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28390.4839399771240772No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24210.4126871027183483No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG16450.2804090392282871No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16370.27904534785210083No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16210.27631796509972845No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16030.2732496595033095No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14040.23932783652067785No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12840.21887246587788484No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12710.21665646739158226No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11540.1967124810148591No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11210.19108725408809105No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10620.18103003018871783No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10290.17540480326194977No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10210.17404111188576357No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9730.16585896362864638No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9290.1583586610596223No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8670.14779005289417926No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8670.14779005289417926No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8650.14744913005013272No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7770.13244852491208453No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7590.12938021931566557No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7100.1210276096365251No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6750.1150614598657105No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6710.1143796141776174No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6500.11079992431512861No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6500.11079992431512861No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6210.10585654307645365No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6120.10432239027824416No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6100.10398146743419764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)