FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547718
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28000.5112119740450378No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16990.3101961228223283No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13300.24282568767139295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10320.18841812757659965No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7870.14368707984765883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7410.13528859741691893No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6360.11611814839023No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6110.11155375576482789No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5600.10224239480900756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)