FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534112
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77651.4538149302019052No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17060.3194086633515068No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12270.229727098436283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9780.18310766281229404No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8070.15109190581750645No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8020.15015577257204482No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6890.12899916122461205No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5700.10671918998262538No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5670.10615751003534839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)