FastQCFastQC Report
Sun 21 May 2023
EGAF00007927065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491305
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10500.21371653046478256No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7910.16099978628346953No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6350.12924761604298757No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5400.10991135852474532No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4930.100344999542036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)