FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470462
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28690.6098260858475286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12150.2582567773805323No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11380.2418898869621776No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9980.21213190438335083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7680.16324379014670687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7660.16281867610986647No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7110.15112804009675596No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5570.11839425926004651No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4850.10309015393379276No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4810.10223992586011196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)