FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472498
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28040.5934416653615465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12980.2747101575033122No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12360.26158840883982576No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10510.22243480395684215No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8170.17291078480755473No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8110.17164093816270123No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7800.16508006383095802No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5700.12063543126108471No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5190.10984173477982975No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4920.1041274248779889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)