FastQCFastQC Report
Wed 31 May 2023
EGAF00007927072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440615
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63831.4486569907969542No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11760.2668996743188498No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10540.23921110266332288No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9610.2181042406636179No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7810.177252249696447No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7370.16726620746002746No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7320.1661314299331616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5410.12278292840688582No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4760.10803082055762968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)