FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480708
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20140.41896535942817675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12760.2654418066684973No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10700.22258834885210982No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9990.20781846776005394No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA8960.18639173885186017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7580.15768408264476563No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7370.15331552626542516No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7190.1495710493688476No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6280.13064063839170556No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5620.11691088977092122No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC5560.11566273080539538No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC5460.1135824658628523No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5420.11275035988583507No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5240.10900588298925751No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5040.10484535310417134No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4960.10318114115013689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)